PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 249aa    MW: 27976.9 Da    PI: 8.8963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001999121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_016481020.1  99 FSCNYCQRKFYSSQALGGHQNAH 121
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-696126No hitNo description
PROSITE profilePS5015711.42799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVTLKRDVHL HPKGGQDVLS SSSSSSCQDE RNYRKQEEDH QNATEDIRLR GKSSGDGDGD  60
ESDHRKNPEL NLLERLNTNN SPICNENDPT SDGAEPRVFS CNYCQRKFYS SQALGGHQNA  120
HKRERTLAKR AGQRPIGHHL FNFTPTAAAA AFGHHPYLRV QHQNNYNFVS SMSTLPLNGA  180
NYQNNSLEIQ AHSMIHKATN SSGNWSNRQF IKHQPGVGKL SMIPKGNIHF IPQEENKSDL  240
QKIDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481020.10.0PREDICTED: zinc finger protein 1-like
TrEMBLM5XDT05e-48M5XDT0_PRUPE; Uncharacterized protein
STRINGVIT_04s0008g05930.t018e-41(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1573967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-30zinc-finger protein 1